Agent Install arguments to provision into specific org
It would be useful for complicated Org setup and unreliable filters (currently an issue with the LDAP/AD query in the public release) to be able to specify the destination Org during the install with an argument. This would allow for overriding the filters when needed, and offer much more control to ensure devices get to the intended destination.

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Jim Finucane commented
I am surprised that more MSP's or companies with a large number of distinct BU's have not run into this issue and upvoted this request.
Any company with a large number of macs is going to struggle with 100% reliable filters to provision to the correct org. Ideally add a new submenu under the "Provisioning" called "Generate custom Agent Installer" and offer the options to create an agent installer that will place the host in the correct org by directly selecting the org or using some kind of client cert or key.